spikeinterface

spikeinterface copied to clipboard

This looks very similar to the `isi_violations`, but there are some subtle differences which (in my opinion) makes it more accurate. I want to implement it parallel to the isi...

DradeAW

Error when running klusta sorter in container mode

3

I'm getting this error when trying to run `klusta` sorter in docker or singularity mode The sorter runs well, this happens when SI tries to extract the container's output ```---------------------------------------------------------------------------...

chyumin

Fix cc

4

@Dradeliomecus : here a first draft for fixing CC. At the moment no test passing. All implementation are failling for the tests.

samuelgarcia

Propagate "load_sync_channel" args to spikeinterface.

5

Propagate "load_sync_channel" args to spikeinterface. And also remove HAVE_NEO_10_2 because it is a mandatory dep.

samuelgarcia

ProbeInterface: Defining a probe manually and attaching it to recording

6

Hi, I am probably making some basic mistake, but I have tried to follow the ProbeInterface documentation as best I could, in order to add the probe information required by...

TdSNielsen

Why are channel groups only int?

1

See https://github.com/SpikeInterface/spikeinterface/blob/master/spikeinterface/core/baserecording.py#L493 Especially when setting with `shank_ids`, I think we should enable at least str, since shank ids could have a name @samuelgarcia

alejoe91

Accessing BioCAM .brw files through neo

15

I'm working on BioCAM MEA recordings, and so far I've been able to use the standalone HerdingSpikes sorter without issues, reading directly from the proprietary .brw files. However, I'd like...

b-grimaud

Based on https://github.com/SpikeInterface/spikeinterface/pull/632 from @maurotoro

alejoe91

BinaryRecordingExtractor.write_recording creates different .dat file depending on n_jobs and total_memory

7

(Using SpikeInterface version 0.94.0) I have ephys data with type "uint16" stored in .raw.h5 format. I use the following code to convert the data to .dat format for Kilosort2. ...

max-c-lim

julienboussard