spikeinterface

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Start porting some lussac concept in curation modules.

1

@Dradeliomecus @eduardacenteno I started what to discuss yesterday.

samuelgarcia

export_to_phy runs out of memory and/or is slow

6

My test recording is 32 channels, 1 hr long. Kilosort2 finds 29 units with normal firing rates (all but one less than 20 Hz, one 100 Hz). Running Win10 with...

hpay

samuelgarcia

spike sorter tridesclous error

3

Hello, I am implementing SI to run tridesclous and spyking circus on tetrode data. I have a .dat file and the channels are stored in order of consecutive tetrodes [...

Zoe0793

How to get data for clustering after run_sorter?

1

Hello, When I execute run_sorter, how can I call the method to get the data after sorter for clustering operation? Is there a relevant reference example？ Thank-you for your time,...

gwq123456

Trouble running Herdingspikes on Spikeinterface

3

Hi! I am having a bit of difficulties getting Herdingspikes to run using Spike interface. This is the error I am getting: The extractor was not dumpable Error running herdingspikes...

nasnass

First draft to go to pyproject.toml

3

samuelgarcia

Error while running dockerized SpykingCircus

4

@alejoe91 @yger Running ``` sorting = ss.run_spykingcircus(recording=recording, output_folder=f"/hdd/kampff/raw/Recordings/{dataset_id}/spykingcircus", docker_image=True, **sorter_params) ``` returns ``` Traceback (most recent call last): File "/home/kyu/miniconda3/envs/di_val/lib/python3.9/site-packages/spikeinterface/sorters/runsorter.py", line 564, in run_sorter_container sorting = SorterClass.get_result_from_folder(output_folder) File "/home/kyu/miniconda3/envs/di_val/lib/python3.9/site-packages/spikeinterface/sorters/basesorter.py", line...

khl02007

I saw a discussion concerning the dtype of the whitening pre-processors, but I just want to highlight that there is some inconsistencies between the pre-processors: some can specify an output...

yger

This is creating extra_requirements similar to how it is done in neo: https://github.com/NeuralEnsemble/python-neo/blob/070eb47325839b8daf30299085f3b8f62eefc243/setup.py#L10-L20 This would allow downstream packages e.g. NeurConv to express the requirements for the CED interface as `spikeinterface[ced]`

bendichter