spikeinterface

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Phy & unit summary plots show widely apart channels belonging to the same unit.

7

Hi Everyone I’m spike sorting neuropixels 1.0 data via spikeinterface, with spykingcurcus & tridesclous exporting the results to phy for visualization & manual curation. I have strange views on phy...

Aryo-Zare

`file_path` -> `folder_path`

alejoe91

alejoe91

Multiprocessing of si_based_sorters fails with TypeError: cannot pickle 'weakref' object

4

Hello, Running Spyking Circus 2 (same goes for Tridesclous 2) on both a real dataset and a recording generated by `si.toy_example()` fail with a pickle error. Here the minimal reproducible...

hornauerp

Create CODE_OF_CONDUCT.md

2

alejoe91

Option to change datatype for whitening

1

We store recording traces as int16 to save space and then whiten within mountainsort4 for sorting. We also use whitened recordings for the metrics, and currently the whitened extractor is...

lfrank

Remove artifact function with explicit timestamps

3

`RemoveArtifactsRecording` takes as input `list_triggers`, which are in frames. On the other hand, `ms_before` and `ms_after` are in milliseconds. This is converted to frames using the sampling rate later. As...

khl02007

Request: timeout in `ChunkRecordingExecutor` (ProcessPoolExecutor)

7

I've been having some stalls in the `ProcessPoolExecutor` when creating some `WaveformExtractor` objects. Unfortunately, there aren't any factors that occur to me for debugging this. However, I made a quick...

miketrumpis

Request: Explicit installation instructions

1

Dear developers, (I'm not sure if this should be an issue or a discussion) this may be because I'm new to Python (and a bit dull), but I have had...

TdSNielsen

No module named \'spikeinterface\'\n'

3

Hello team, I've just git pulled the latest version of spikeinterface and set the SPIKEINTERFACE_DEV_PATH. I'm getting the following error message: ``` SpikeSortingError: Spike sorting in docker failed with the...

phanhuynh