spikeinterface

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SpikeGLXRecordingExtractor fails when gate > 0

31

Hi @samuelgarcia and all, Initializing a `spikeinterface.extractors.SpikeGLXRecordingExtractor` object from a probe directory with gate index 0 works properly: ``` $ ls subject_dir/run_name_g0/run_name_g0_imec0 1-6-2022_g0_t0.imec0.lf.bin 1-6-2022_g0_t1.imec0.lf.bin 1-6-2022_g0_t2.imec0.lf.bin 1-6-2022_g0_t0.imec0.lf.meta 1-6-2022_g0_t1.imec0.lf.meta 1-6-2022_g0_t2.imec0.lf.meta ``` ```python...

TomBugnon

Compatibility for .pl2 files

1

As Plexon .plx file is supported, will there also compatibility for the newer format .pl2 be implemented?

KonKob

bendichter

How to use plot_unit_waveforms API?

11

Hi developers, Sorry I have a simple question... After I read the API doc, there are two parameters, namely, _channel_ids_ and _units_ids_ in the _plot_unit_waveforms_ function. So basically can I...

Yuhao-Zhang-SV

@lfrank @magland @alejoe91 summary: #552 didn't resolve our issue issue: we store data from both tetrodes and probes in the same NWB file. The location of the channels in a...

khl02007

Add CI for ingesting neuroscope spiking data

5

https://gin.g-node.org/NeuralEnsemble/ephy_testing_data/src/master/neuroscope/dataset_1

bendichter

Mismatch in sw.plot_timeseries

2

Hi all, when we use a multishank probe, we observe a mismatch between the probe mapping and the order in which the channels are plotted using sw.plot_timeseries when the boolean...

vincisLab

mountainsort runs far slower on spikeinterface

5

An interesting observation I've made while sorting a relatively small recording is an enormous processing time difference between using mountainsort installed independently ([this version)](https://github.com/flatironinstitute/mountainlab-js), vs running it through spike interface...

rtraghavan

Channel maps for tetrode arrays

4

In the past, we have used Kilosort2 to do sorting. Because we are using 64 channel tetrodes, and the recommendations from Kilosort is to give each tetrode a different `kcood`...

matiasandina

@samuelgarcia @alejoe91 https://github.com/SpikeInterface/spikeinterface/pull/489 > By the way, I think the users should always give to sorters an AppendRecording and get back a SplitSorting. For the sorters that only operate on...

khl02007