spikeinterface

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Circus2 pipeline

3

Fixing some small bugs in the OMP peeler, and enhancing spykingcircus2. Figures for Sam will follow soon :-)

yger

samuelgarcia

export to phy output is different in the new version of spikeinterface (0.95) _ phy can not open it.

9

I encountered the problem while exporting the waveforms to phy for manual curation with the new version of spikeinterface (0.95). With the previous version (0.94) which I had installed a...

Aryo-Zare

nwbextractors: handling offsets in the electrode table

1

Hi, these lines are leading to a TypeError for me when multiplying the offsets by a scalar (`1e6`). I think when grabbing `offset = self._nwbfile.electrodes["offset"]` you actually need to do...

miketrumpis

All the other sorter failed except of tridesclous

2

Hi I am using SpikeInterface to perform spike sorting on my binary file extracted from EDF. But only "tridesclous" worked so far, the other sorters all failed. Here is a...

betty6you

WaveformExtractor computing templates can reach limit open files

4

Hi, On Ubuntu, there is a limit to how many open files you can have at once (by default, I believe it's around 1,000-2,000). But this means that if in...

DradeAW

Hi, I came across a (not very likely) scenario where an unintended behaviour happens. If you call `si.extract_waveforms(..., load_if_exists=True, precompute_template=("average", ))`, and the folder already exists **but** the file `templates_average.npy`...

DradeAW

Error when saving/caching with `resample`

3

Hi! I'm getting en error when trying to cache a down sampled recording but not on a recording that was only filtered/re-referenced. When checking the number of samples of the...

mfvd

Avoid segmentation error during kilosort2 cluster splitting

4

Hi We have been experiencing [segmentation errors](https://github.com/MouseLand/Kilosort/issues/199) during cluster splitting with kilosort2.5 We resolved this [by installing a different version of the mkl library](https://github.com/MouseLand/Kilosort/issues/199#issuecomment-754971599) and, in our fork, [setting the...

TomBugnon

ArrayMemoryError when using tridesclous

14

Hello team, I've attached the error log for tridesclous. The key phrase is: ``` raise self._exception\nnumpy.core._exceptions._ArrayMemoryError: Unable to allocate 10.2 GiB for an array with shape (42923008, 64) and data...

phanhuynh