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ryanlayer
Plot structural variant signals from many BAMs and CRAMs
Hey Samplot developers, I ran into another question which is about the interpretation of plots. I am working on pacbio and nanopore reads and called structural variants. I found Samplot...
Hello, I am trying to install this package and getting errors while installation. Is the package still working?
Hi, I discovered a de novo deletion from my trio BAM files (long reads) using samplot. This deletion was not detected by the long read SV caller I used. I...
I am just analyzing some structural variants in a de-duplicated BAM file. I have just noticed that following your code I can plot Deletions or Duplications. However, I have not...
Dear Authors, Would it be possible for you to release samplot as a singularity image (.simg / .sif) or its binary file for easy installation? I tried installing samplot via...
Hi folks, In `samplot vcf`, the accumulator variable for the number of parsed variants uses `enumerate()`, which means that the `var_count` variable wasn't define if there were no variants in...
Hello -- Thank you for developing and maintaining a powerful resource for the genomics community. I've genotyped SVs for a species of bird, and noticed there was an aberrantly large...
Hi @ryanlayer @jbelyeu Greetings!! Is it possible to change the color of the coverage from grey to a color of choice such as blue or maroon? Sometimes we have control...
I have more than 500 samples, and it doesn't work.
time samplot plot \ -n 1A 2A 3A \ -b /xxx/1A.Mdup.realigned.recal.bam \ /xxx/2A.Mdup.realigned.recal.bam \ /xxx/3A.Mdup.realigned.recal.bam \ -o chrx_start_end.png \ -c chrx \ -s start \ -e end \ -t DUP...