samplot
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ryanlayer
Plot structural variant signals from many BAMs and CRAMs
Is it possible to limit max of coverage axis in samplot via CLI? For example, in this example plot, I would like to restrict y-axis max to 100, instead of...
This is an incredible tool that must absolutely be published. Thank you for developing this superb program. I have a couple questions and a comment. Even without given any SV...
Thank you for this amazing tool! I have a question about linked reads, I am using samplot vcf with some barley 10X data but the linked reads that should be...
When adding the annotation at the bottom of the plot, the gene names become difficult to read when there are lots of isoforms. Could the gene name placement be modified...
HI, I actually found two bugs when parsing vcfs with samplot vcf (clean conda installation of samplot 1.0.19). As my python knowledge is quite bad, I cannot tell where the...
Hello, First of all great tool - so easy to use and the plots are perfect for publication!!! I'm not sure if it is an issue with my gff3 file...
``` Used command samplot vcf -v SV.sort.vcf -O png -b data.bam --important_regions gene_region.bed -d results --sample_ids "data.bam" --gff Homo_sapiens.GRCh38.100.chr.gff3.chr.gz --command_file samplot_commands.sh I have results (but the gff annotations are not...
Hi there, any hint how I can prevent that samplot cuts off the tips of the coverage track? Or otherwise, is there a possibility to manually set the coverage range...
Could the duphold QC metrics be added to the samplots? The combination would be very helpful to have together when examining SVs.
Can not parse any name of chrID This tool can not parse any other format of chrID except chr#. For example, if my chr ID or reference seq id is...
