time samplot plot
-n 1A 2A 3A
-b /xxx/1A.Mdup.realigned.recal.bam
/xxx/2A.Mdup.realigned.recal.bam
/xxx/3A.Mdup.realigned.recal.bam
-o chrx_start_end.png
-c chrx
-s start
-e end
-t DUP
-w 47
-T /xxx/genome/hg38/Homo_sapiens.GRCh38.111.sort.gff3.gz
$ bash samplot.test.sh
Traceback (most recent call last):
File "/Parastor300s_G30S/zhangjj/software/miniconda3/bin/samplot", line 10, in
sys.exit(main())
File "/Parastor300s_G30S/zhangjj/software/miniconda3/lib/python3.9/site-packages/samplot/main.py", line 31, in main
args.func(parser, args, extra_args)
File "/Parastor300s_G30S/zhangjj/software/miniconda3/lib/python3.9/site-packages/samplot/samplot.py", line 3655, in plot
plot_transcript(
File "/Parastor300s_G30S/zhangjj/software/miniconda3/lib/python3.9/site-packages/samplot/samplot.py", line 3419, in plot_transcript
transcript_plan = get_transcript_plan(ranges, transcript_file)
File "/Parastor300s_G30S/zhangjj/software/miniconda3/lib/python3.9/site-packages/samplot/samplot.py", line 3331, in get_transcript_plan
genes[info["Name"]] = [
KeyError: 'Name'
real 0m2.285s
user 0m1.503s
sys 0m1.398s
ryanlayer
