samplot
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ryanlayer
Plot structural variant signals from many BAMs and CRAMs
I mostly use samplot through conda and it wold be nice to access the new features.
Hello, I am trying to understand the output from samplot for some SV calls, but am having trouble with interpretation. Any help would be greatly appreciated. For example, an inversion...
Hello! I have been using Samplot since the past few days and it has proved to be very efficient. There are certain cases where split reads overlap with paired reads...
Lately I've been trying to detect SV signals in my reads and have been using samplot as a way to verify that my methods are working, and I noticed that...
Thank you for creating this beautiful visualisation tool! It would be nice to have a progress bar for `samplot vcf` to track progress when running with `--plot_all`. For example using...
Hi! Thanks for developing this wonderful package! I have visualized this result for one of our data and we are trying to find the evidence of translocation. I know that...
Hi, Thank you for the great program. While I am testing the samplot (v.1.2.0), I have bumped into a problem. FYI, Target species: Plant Raw reads: PacBio Sequel Aligner: Generated...
I think it would be worth looking into making an api for samplot to be able to return numpy arrays and/or saving images from python directly instead of using the...
I tried to visualize Insertion (SV). I used SVIM as a sv caller and they give same location for start and end position. Therefore, I can't visualize the insertion. how...
  Hello. I used samplot with long-read sequence of c_elegan and visualized inversion. I don't know how to interpret the red lines in here. what's the difference between red...