Dongwook Kim

Every data is based on the pairwise comparison. Number of CDs should be in the `./output` result file, just try `head ./output`. # of CDS from both genomes, as well...

Hello, This is a feature I planned to implement before (see issue #25) but procrastinated forever due to my other businesses 😅 I will be able to look into this...

Hello, Unfortunately, there is no other way but to scavenge through the temporary files to obtain that information. As you suggested in the issue #33, I suppose this feature can...

If `-n` flag exists, the program will exclude introns from the result. You can simply remove this flag to not activate this feature. For example, your commands should be: ```...

Hello, thank you for your kind words! You are correct; Currently our pipeline isn't capable of processing the variants, i.e. sub-optimal sequences detected by the `profile` module. `align -c 1`...

Dear Jianshu, This is possible by using a directory with multiple databases as an input of the `calculate` module. The module will automatically collect all databases and perform many-versus-many comparison....

If you are requesting for an option to provide a list to define a subset of the input directory, or a collection that spans across multiple directories, that is currently...

Dear Jianshu, Unfortunately no, `extract` module currently works with one genome at a time. This is because back then I didn't have a clue to automatically assign database names or...

Hi, sorry for being super late to come back to this. I recently made an update that implements this feature in which `extract` module is now capable of batch extraction...

Hi Scott, sorry for the late reply. From our website we provide downloadable links to the HMM files, e.g. HMM button on [this page](https://ufcg.steineggerlab.com/ufcg/genes/act1) These HMM files can also be...