Dongwook Kim

Hi, I pushed a new version of Docker container recently. Could you please check it out?

Hey @jackscanlan, Thanks for sharing the results. For the second issue, BUSCO config files are missing. Running `ufcg download -t busco` will solve it. I should have provided a proper...

Hi, I tried to reproduce your error in both conda and docker environment, but both worked fine from my side. Could you please try to create a clean conda environment...

Hey @JuliaPlewka, could you please run `java --version` and `which java` on the system from which you encountered the error? I suspect this occurs in specific version(s) of JDK/JRE.

@Muzixibeijin I recommend you to compile the program from source instead of using conda, as described in https://github.com/steineggerlab/ufcg?tab=readme-ov-file#build-from-source. Alternatively, you can install older versions of JDK (8 or 11), which...

Hello, Seems like a false positive hit, which can be resolved by lowering the search sensitivity after I implement the feature as #19. For now, could you please try to...

Could you check if the same super long COX1 sequence was found from the profile generated with the lowest sensitivity option? If so, I will try to look into the...

I recently stumbled into this error using a smaller dataset and found the exact reason why IQ-TREE suffers. IQ-TREE deduplicates the input MSA, therefore if given MSA contains 3 or...

`-T` option is given internally to set a multi-thread option for `iqtree` binary. This error should not happen, unless the dependent binary is either not properly installed or updated with...

@JWDebler I looked into this, and found out that the Maven compiled binary doesn't properly include the GSI calculation package as a dependency. Precompiled JAR (including the conda release) doesn't...