Dongwook Kim

The cleaning script is included in the config payload and they'll be gone after the version update. It should work fine after downloading it with `ufcg download -t config`.

Dear Brigida, Thank you for reaching out! Based on the error message you provided, it appears that the result file of the `fastBlockSearch` run is corrupted or improperly formatted. You...

To use the `agaricales_odb10` database you will have to download and process the ODB profiles into the form that UFCG pipeline can accept. For this, please run the following commands...

For the second question, output of the `ufcg tree` module includes a Newick file named `concatenated_gsi_[N].nwk`, which is the very tree labeled with GSIs that you are looking for. `[N]`...

Hello, could you please tell me from which OS you are running the pipeline? The pipeline runs `ping -c 1 ufcg.steineggerlab.workers.dev` using Bash to check for the internet connection. It...

Seems like the connection cannot be established to our public data storage for some reason. Please try executing the following commands to download the required packages: ``` wget -O core.tar.gz...

Ah, thank you for pointing it out. clumsy me 😅

@boegel I added a force option to the `download` module, which use `wget` to download the package regardless of the connection status defined by the `ping` command. You can build...

Hello, The error you mentioned normally should not occur when `-m` option is not given. The program will write a temporary metadata file `/tmp/meta_tmp.tsv` for you, which is supposed not...

Seems like the error was occurred by the concurrent change in the contents of `/tmp` directory. Generating a custom temporary directory (e.g. `/tmp/ufcg`) and providing the path via `-w` option...