Daniel McDonald

@rob-knight, it is dependent on Qiita as it sources processed feature tables through redbiom. However it does not utilize Qiita for derived components from feature tables. I think that we...

Any luck using a different/new preprocessed parameters set? On Wed, Mar 11, 2015 at 4:25 PM, Greg Caporaso [email protected] wrote: > This seems to be a bigger problem that we...

Does the act of setting the min qual score value (even to None) force split_libraries to need qual? On Mar 11, 2015 7:47 PM, "Greg Caporaso" [email protected] wrote: > I...

That's annoying... so ya, even a new set of processed params wouldn't work. It actually would be a small fix to make split_libraries handle this but that would necessitate 1.9.1...

@mortonjt, is it that 599482 unique features from the input deblur table failed to recruit to Greengenes, or a total of 599482 reads failed to recruit? What's the total %...

The reoccurrence of features across samples is exciting. Do these recruit to greengenes at, say, 90%?

To add, not retaining the ebi sequence data locally for those fetches, just process and keep summarized results (e.g. biom) On Oct 4, 2017 8:54 AM, "adswafford" wrote: > Daniel...

So storage is negligible On Oct 4, 2017 8:58 AM, "Daniel T. McDonald" wrote: > To add, not retaining the ebi sequence data locally for those fetches, > just process...

If we perform the processing of the EBI data, then we can assert consistent processing and associate the correct processing parameters. Performing additional processing for a (pure) EBI study would...

This is also confusing within the API as incorrect values are reported in multiple places, including in the parent. ```python In [21]: t = biom.load_table(a.filepaths[0][1]) In [22]: len(t.ids(axis='observation')[0]) Out[22]: 150...