Daniel McDonald

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should this go here given that it is specific to data processed on barnacle?

One concern here is that the user is still required to specify the database at runtime, right? So they'll still need to know the path. They may not realize what...

:+1: On Tue, Aug 23, 2016 at 2:17 PM, Jamie Morton [email protected] wrote: > One way to make this happen is to have python variables declared within > **init**.py pointing...

Hi @Jigyasa3, how was sortmerna installed? `indexdb_rna` is one of its programs which the traceback reports as not being found

Could you try specifying the trim parameter when running deblur? The sequences are not a consistent length but the deblur algorithm needs them to be. note that if a 5'...

(A) we do not typically do fastp for 16S in Qiita, right @antgonza? (B) it is saying the trim length is to large, it seems your sequences may be shorter...

Pickle is easy but python specific. TSV may be nice as it allows for operability easily in R or Python

store the tree as a newick string?

Thank you, @TaskeHAMANO, for these PRs! It looks like our travis configuration has grown slightly stale. If you have a second, would you be able to try removing "--process-dependency-links" from...