Daniel McDonald

Results 305 comments of Daniel McDonald

Sure. deblur could import later the object and revise the column name afterward

Going through old PRs. I think it would be fantastic to get this merged, but in my opinion the following few items would be great if possible: - shift the...

It looks like h5py resolved this in 3.0.0 but is not yet available in conda to test against.

What about computing quadtrees over the tip coordinate positions? It should then be possible to use the x/y position of the mouse to get the set of tips present in...

It's kinda like a 2D binary search :)

@zoechallacombe, this is the issue I mentioned on our call where quadtrees may be beneficial

There's a manpage? @colinbrislawn I am strongly in favor of expanding the accessible examples and documentation, and would eagerly accept PRs on this

I think the best long term solution would be to at release, dynamically create a page, per command, based off the docstrings within the commands. Would you be interested in...

Or a smarter algorithm for partitioning a single fasta file in which fewer handles are open at a time. Probably could be done with a heap where the files which...

This still appears to be an issue. @amnona is there a trajectory toward a resolution here? Note: this is _not_ an issue when driven from qiime2, and so one strategy...