Daniel McDonald

Qiita reference files (like databases) are currently residing on regular storage

1

Spin up performance should improve appreciably, particularly for parallel workflows, if wol and rep200 were operating from panfs

It would be nice to easily have available the % of reads which recruit to a database per sample and whole study

Discussion: auto-updating analyses, and expressing Microsetta processing as Qiita analysis

3

On the construction of the Microsetta results pages, @rob-knight suggested allowing participants to link directly to an analyses in Qiita depicting meta-analyses used in the results report. To do this,...

Rename Command.parameters to Command.default_parameters??

8

If you select a BIOM artifact from a files network, it shows in the "processing parameters" used and they include a value for "trim-length". However, that value is not incorrect...

redbiom metadata searches are very slow

1

Searching for "antibiotics" takes minutes to longer. The same search from the command line (´redbiom search metadata antibiotics´) takes roughly 10s.

...if the button is ticked, it the information file is checked to ensure the required metadata columns are present and if not, informs the user missing fields. At present, the...

When adding a new PI, an account should be created and the person should be contacted

2

From @rob-knight, should likely also happen when the a lab manager is added too

xsrf_form_html

2

Any reason to not use xsrf_form_html? I believe we're not using Tornado's native XSRF protection at this time. Need to add `"xsrf_cookies": True,` into settings. More details [here](http://tornado.readthedocs.org/en/latest/guide/security.html)

Unusual error messages in the illumina tutorial

6

Seeing many of these coming from `core_diversity_analysis.py`: ``` bash can't invoke "event" command: application has been destroyed while executing "event generate $w " (procedure "ttk::ThemeChanged" line 6) invoked from within...

Outdated links on install page

3

Many of the links on the QIIME install [page](http://qiime.org/install/install.html) are outdated and do not work. Specifically, ones which point to `thebeast.colorado.edu` need to be revised to point to `ftp.microbio.me`