Christian Brandt
Christian Brandt
@DataSpott please add `nextflowVersion = '!>=24.10.4' ` to the configs manifest section.
full run with 40 samples runs fine
currently updating porecov to some adjusted syntax and thus higher nextflow version requirment. (see https://github.com/replikation/poreCov/pull/281). i will merge this into the master this week. you might need a git rebase...
@fischer-hub now in master
would recommend to add some log.err logic since you changed the primer version names. e.g. ``` if ( params.primerV == 'V1') { log.error "V1 has been renamed to V1.0.0 please...
As long as the container runs, I'm fine with it. Most of the nanozoo containers we use are because alternatives were not compatible with a cluster or cloud setting, or...
Yep, it's completely fine to extend Porecov now on the wastewater surveillance. We just need to make sure the normal "user experience" is not convoluted.
Not sure if it is possible to implement a subcommand or a second "main.nf" solely for the wastewater part? (thinking samtools subcommand for instance)
Yep I am in favor of this On Fri, Jan 31, 2025, 10:48 Martin Hölzer ***@***.***> wrote: > Yep, I am also supporting updating to use Clair3 and making a...
> In this context, the help mssg > > ``` > --screen_reads Determines the Pangolineage of each individual read (takes time, needs --freyja and/or --lcs) > ``` > > Is...