Christian Brandt comments

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                                            Christian Brandt

process.executor is not recognized for certain nextflow versions and process orders in the configs

@jorgeaguileraseqera thanks for clarifying.

process.executor is not recognized for certain nextflow versions and process orders in the configs

Can't see how this applies as I specified the executer only once. I don't know so this might be attributed to nextflow automatically specifying the Local executer or so?

cd-hit-dup Segmentation fault (core dumped)

core dumped is a hardware issue. Too little disk space or RAM

Failed to pull singularity image

* hi can you run WtP via `--setup -profile slurm,singularity` first to pre-download all images first and check if the bug persists? * singularity has sometimes issues while building them...

Failed to pull singularity image

* closing this, please reopen if error exists

Failed to pull singularity image

@hoelzer are you able to run the setup on WtP with your singularity system?

Freyja integration

can be merged if everything is also fine on your end @hoelzer

Idea for the report table: A mini-plot that shows where Ns are in the assemblies

status? @MarieLataretu @RaverJay @hoelzer

Idea for the report table: A mini-plot that shows where Ns are in the assemblies

sounds good. so it will be in the final report then?

Idea for the report table: A mini-plot that shows where Ns are in the assemblies

+1 for the hide part