Christian Brandt
Christian Brandt
ah "OSError: [Errno 30] Read-only file system: '/home/'" is a singularity error @hoelzer can you tune in you had this OS errors before
maybe the answer with the --writable helps for singularity: https://stackoverflow.com/questions/65599721/unable-to-build-writable-singularity-container
based on the error pangolin wants to write something in its own container home directory. and singularitys home is not writable. as far as i understand (?) but this is...
adding `singularity.autoMounts=false` to the config could work maybe? so changing this. (could be the reason why the variable is not working if the config overwrites it) https://github.com/replikation/poreCov/blob/f86681effd9eacba3754b3f83b8ab6c275c8b310/nextflow.config#L146 `autoMounts = false`