replikation
ARTIC/fieldbioinformatics update
Hi folks,
Recently there was an update of ARTIC/fieldbioinformatics to 1.6.0: https://virological.org/t/fieldbioinformatics-updates/988
One important change is that medaka (and nanoploish and longshot) have been replaced by Clair3. Also, the management of ONT models is different, which could make model updates easier.
It would affect quite some parts of poreCov, so this would be a major release.
Let me know what you think - I'd definitely be in favor of Clair3 (and directly getting allele frequencies).
Yep, I am also supporting updating to use Clair3 and making a major release
Yep I am in favor of this
On Fri, Jan 31, 2025, 10:48 Martin Hölzer @.***> wrote:
Yep, I am also supporting updating to use Clair3 and making a major release
— Reply to this email directly, view it on GitHub https://github.com/replikation/poreCov/issues/280#issuecomment-2626786367, or unsubscribe https://github.com/notifications/unsubscribe-auth/AIQSLLRNDKGZW2CZPTZ7UR32NNBIHAVCNFSM6AAAAABWHCZP6OVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDMMRWG44DMMZWG4 . You are receiving this because you are subscribed to this thread.Message ID: @.***>
