David S. Fischer

icon indicating a website link https://www.linkedin.com/in/david-fischer-0012b5126/

icon location I develop mechanistic machine learning tools for single-cell and spatial omics datasets to understand the regulatory patterns underlying human disease dynamics.

Results 23 issues of David S. Fischer

add save option for output for DET

2 comment

add gene names to volcano plots

add use_raw argument to tests

visual trajectory grouping

1 comment

- [ ] clustering - [ ] ordering heatmap by peak time

enhancement

supported tensorflow versions

- Support diffxpy usage without batchglm for t-tests and rank tests - Explore supporting tf1.12,13,14 This was requested by @dburkhardt.

enhancement

rerun all tutorials

some links in the tutorials are not working

bug

lrt throws error in summary when computing lfc if confounding is present

volcano plots specifications

2 comment

Just a note... I also have some code to make a volcano plot in line [111] [here](https://github.com/theislab/single-cell-tutorial/blob/master/Case-study_Mouse-intestinal-epithelium.ipynb). Don't know if this is still needed, but I thought I would see...

add basis space test function which show spline basis transform

To debug spline based fitting and potentially compare different transforms in the future.

enhancement