spikeinterface

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Mountainsort5 Wrapper Todo list

2

So after talking to @magland, he said we could tweak the wrapper here if necessary so I just wanted to list our current issues. I'm happy to try to start...

zm711

Is it possible to access original data through preprocesed `BaseRecording` instance

4

The pipeline ``` Binary File -> Preprocessing -(1)-> Sorting -(2)-> Wave Extractor -(3)-> Neuron feature assessment. ``` The last class gets `BaseRecording` after (1) and uses `get_traces` to compute a...

rat-h

Desired structure for examples in the code base

17

Inspired by #2316, There are two main places to put actual examples in the documentation: The `modules_gallery` or the `how_to`. It is currently unclear what the separate goals for these...

zm711

samuelgarcia

analyzer.get_extension using "|"

20

@DradeAW : this is for you.

samuelgarcia

ValueError: The sorting object has spikes exceeding the recording duration.

15

Hi, This error below is new and never happened before while trying to extract waveforms from sorted data. Below is the code: ``sorting_KS25 = ss.read_sorter_folder(base_folder/"results_KS25") sorting_KS25 recording_saved = si.load_extractor(base_folder /...

taningh86

Extension delete on recompute

6

@chrishalcrow : this should fix the issue we discussed when recomputing something all children dependency are not valid anymore and have to deleted. Here a simple implementation of this idea.

samuelgarcia

Inconsistencies in the way global_job_kwargs can be defined

5

Currently, there are some inconsistencies in SI with the way global job params are handled. For example, verbose can be set in such a global dict, but then, it is...

yger

Removing the mean of the templates to enhance the matching with circus-omp-svd

yger

In this PR, I've added at new node to detect peaks via matched filtering. The node accepts a prototype waveform, and will create spatio-temporal templates to convolve the traces with...

yger