visual_behavior_analysis

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pytest runner for Jupyter notebooks

3

It would be useful to have Jupyter notebooks run as part of pytest for several reasons: * Code that is included in the notebook cells could be tested to see...

nickponvert

this may be an issue with convert_level_1_to_level_2, or it could go back to the core_data structure. I have not yet investigated the cause, but something is clearly off somewhere. 

matchings

validate_flash_blank_durations failing on cluster D

5

The blank durations are longer than expected on the rig. We expect them to be 500 ms, but the mean is 516.84 ms. I built a one frame tolerance into...

dougollerenshaw

timeout variable not tracked in session dataframe

3

There is a parameter in the stimulus_code called "timeout_duration". It interacts with the 'delta_minimum' variable in defining the period after a guess lick before the a change can be presented....

dougollerenshaw

integration tests committed by ckm do not work

1

Due to my terrible hackjob testing framework I've been able to accidentally pass tests (changed the file source path but didnt delete my local cache >.>...). I've resolved it in...

mochic

Exact zeros in dff traces

5

@matchings @jeromelecoq I've noticed something odd, and I'm not sure if its a bug, but I can't think of a reason why it might be true. Some sessions have df/f...

alexpiet

omitted flashes: repeated time values, also consecutive!

14

@dougollerenshaw Hi, I am looking at the omitted flashes of session_id : 814281477 Two issues: 1) two of the omitted flashes are repeated in the start times below (check the...

farznaj

which image is the changed image

1

@matchings @jeromelecoq Hil I am looking at dataset.stimulus_table, and I have access to image names. How do I figure out which image is the changed image? I remember seeing this...

farznaj

Some fixes in branches need to be consolidated

1

@matchings has included some features in the branch for manuscript analysis (including omitted flashes in the stimulus table and counting stimulus repeats). Things like this should be merged back into...

nickponvert

error in foraging.data_to_change_detection_core

12

@jeromelecoq session_id: 855711263 experiment: 856123117 (mesoscope session ; The workflow for the experiment is QC). I get the error below when running the convert code. Any thoughts? File "", line...

farznaj