visual_behavior_analysis

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Return metric value and threshold for validation functions that have them.

3

The purpose of this is to : - Be able to debug when validation is failed - Have a record of data-trends in the QC system that goes beyond pass...

jeromelecoq

Make foraging2 output logs accessible on network

1

@derricw: when Foraging2 runs, a text file containing stdout is created on the local machine. These are useful for diagnosing failures, but accessing them requires logging into the rig computer....

dougollerenshaw

Two things related to volume calibration: 1 - Is Foraging2 currently logging the calibration values that were used? 2 - Can we (should we?) create a simple foraging2 script that...

dougollerenshaw

psycopg2 is giving us a warning on python 2.7 ``` tests/test_ophys.py::test_generate_level_1 /home/justink/Code/visual_behavior_analysis/.tox/py27/local/lib/python2.7/site-packages/psycopg2/__init__.py:144: UserWarning: The psycopg2 wheel package will be renamed from release 2.8; in order to keep installing from binary...

neuromusic

I had trouble installing the repo on a Mac. Steps of what I did and how I fixed it are below: 1) Cloned the repo 2) Tried _python setup.py install_...

CellAssembly

move tools for adding columns to flashes from ophys/response_analysis/utilities to core_data

2

currently testing additional columns such as flash repeat and block number in the ophys module for use in flash_response_df, but these really belong in the core_data['visual_stimuli'] aka stimulus_table aka flashes...

matchings

is this truly the mouse's first exposure? can use vb foraging functionality to load multiple pkl files for a given mouse

matchings

add "name" to metadata for image sets

1

e.g. if the image set path is `//allen/programs/braintv/workgroups/nc-ophys/Doug/Stimulus_Code/image_dictionaries/Natural_Images_Lum_Matched_set_training_2017.07.14.pkl`, the name would be "Natural_Images_Lum_Matched_set_training_2017.07.14"

neuromusic

Ryan's QC program identified a foraging2 session on 2P3 that has two trials without change times (trials 3 and 221). It looks like the scheduled change time was drawn very...

dougollerenshaw

@jeromelecoq caught one session 2P3 where the number of warmup trials was one less than specified (5 specified, 4 delivered). This appears to be a rare error, but logging it...

dougollerenshaw