Zhengtao xiao
Zhengtao xiao
Hi, the same problem happened to me. I think only the new version(0.09) have this problem. I tried the old one (v0.07), it worked well.
@Vivianstats Hi Vivian, this error might be raised when there are NA or empty values in the input file. It would be very helpful if you could add a function...
This function is defined in "utils.R", you can load it by using `source("utils.R")`
是的，只使用了inframe reads （0位）计算的表达量
> 假如我预测的是uorf,在结果文件里这个Psites_frame0_RPKM计算的是uorf inframe reads （0位）的表达量吗，而不是annotated orf的表达量。请问我的理解是正确的吗？我看结果的表格里也记录了annotated的位置和信息,谢谢您！！  是的，你的理解是对的
I guess you might create the pickle file using a low version of Python and load it in a new version of Python. Please try to remove the pickle and...
If you only want to identify the novel translating ORFs, PCR duplication removal is not necessary. PCR duplications might influence the quantification of the translational level of ORFs。
Please update Numpy.
Thank you for pointing this out. I have fixed it.
There are no CDS regions in your GTF file. RiboCode infers the P-site based on the reads mapping to the known CDS regions.