Qiyi Yuan

[BUG] ValueError occurred after running anvi-reaction-network

3

## Short description of the problem "ValueError: max() arg is an empty sequence" was encountered after running anvi-reaction-network. ## anvi'o version Anvi'o .......................................: marie (v8-dev) Python .......................................: 3.10.13 Profile database...

### Description of bug Two-steps repeat resolution (RR) is most memory-hungry for metagenome assembly, especially large-scale ones. I hope to learn pros and cons of RR, whether it is necessary...

spades-core terminated automatically during k-mer counting without errors

4

### Description of bug I tried to assemble metagenome reads via SPAdes (--meta), yet only the first k-mer can be assembled successfully without other manipulations. During the second k-mer assembly,...

Store intermediate de Bruijn data in tmp folder rather than in RAM

1

### Is your feature request related to a problem? Please describe. For generic questions use Q&A section in the Discussions forum above. SPAdes (especially metaSPAdes) requests too much memory. Exploring...

COVID detection available?

1

Hi all, May I know whether virsorter2 is capable to bin COVID genomes? I tried once but failed. Thx!

About risk hierarchy

3

Hi Anni, First many thanks for your contribution in AMR risk assessment. It's very useful. Here I have two questions. The first one is about Rank-IV ARGs. From our metagenomics...

openmp wasn't detected on mac with installed llvm and libomp

3

**Describe the bug** I have installed llvm and libomp successfully and set configure arguments, yet openmp still couldn't be detected. **Code for Reproduction** install.packages('abess', type = 'source') **Desktop (please complete...

OSError: AF_UNIX path too long

1

Hi all, I encountered this error: [2024-07-28 08:43:11] INFO: CheckM v1.2.3 [2024-07-28 08:43:11] INFO: checkm lineage_wf -x fa reassembly_nus/reassembled_bins reassembly_nus/reassembled_bins.checkm -t 96 --tmpdir reassembly_nus/tmp --pplacer_threads 22 [2024-07-28 08:43:11] INFO: CheckM...