spades-core terminated automatically during k-mer counting without errors

[yqy6611]

Description of bug

I tried to assemble metagenome reads via SPAdes (--meta), yet only the first k-mer can be assembled successfully without other manipulations. During the second k-mer assembly, spades-core process disappeared automatically during k-mer counting phase without any error messages.

spades.log

spades.log

params.txt

params.txt

SPAdes version

SPAdes v3.15.5

Operating System

Ubuntu 22.04

Python Version

Python 3.12.1

Method of SPAdes installation

conda or manual

No errors reported in spades.log

• [X] Yes

[asl]

I would suggest you to ask your system administrator. This looks like some problem at your end, e.g. some i/o problem

[yqy6611]

This is our own workstation. So any suggestions on how to fix this issue?

[asl]

Check your system log. Might be something there

[yqy6611]

I have checked the system log, but there are no errors related to this.