violafanfani

icon indicating a website link https://violafanfani.github.io/

icon location I am a postdoc at Harvard School of Public Health. I am part of the @quackenbushlab , where I work on computational biology for regulatory network inference.

Results 8 comments of violafanfani

added lioness dragon impl and test outline

Is this ready to be merged? Should I wait?

Lioness indices

What should the background be here? All samples and then run lioness on 4,5,10 only? or should everything be computed on 4,5,10 only?

Lioness indices

Fixing with PR #279

Lioness indices

It was fixed with #281 in the end. For now it is on the devel branch, will soon merge to master.

Panda preprocessing expression

Ok, great job! Thanks for helping on this.

Singular shrunken covariance matrix in DRAGON

Ehi Kate, is this still something you will work on in the future? I assigned it both a bug and an enhancement label for now

LionessPuma issue: compute_puma() missing 1 required positional argument: 'sorted_index'

This should now be working

Dependency on pkg_resources

Thanks Ladislav for pointing this out! I'll find a solution ASAP