violafanfani
violafanfani
Add flag for lioness where we can run lioness with all samples as background, but computes lioness on a subset of samples. Right now start and end are used only...
- solving a small bug in LIONESS CLI - Adding a class to deal with otter - CLI for otter and lionessotter
I am trying to run the "Exploring eQTL tissue regulation with CONDOR" notebook locally, but I think the companion files are only in the instance's storage. Can they be saved...
Currently all reading functions (PPI, motif, expression) are inside the preprocessing steps of PANDA and are not accessible from the outside. These need to be methods of the PANDA class....
Given the issues that people are having with conda, we will consistently load netZooPy on pypi
Last version is 3.10, add at least 3.12 https://github.com/netZoo/netZooPy/blob/0d483568fae0d6b83d38a38e17e0866db6beb82c/.github/workflows/main.yml#L19
Starting to integrate giraffe. Needs testing
Conda is able to upload the noarch version but not the others. Needs fixing