Sofia Stamouli
Sofia Stamouli
Do you suggest to leave it as it and skip this update or to increase it to to > 80GB?
Yes, I got a memory error.
metaMix: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4565032/ Benchmarking: https://www.sciencedirect.com/science/article/pii/S138665322100175X?via%3Dihub
New bioconda recipe that seems to work so far so I am reopening this.
`https://anaconda.org/bioconda/porechop_abi` There is a conda environment, I think that this can be added in the next release or what do you think?
https://github.com/bonsai-team/Porechop_ABI/issues/6
I was thinking if we should only support `porechop_abi` and drop `porechop` at all.
According to their github page: `Note that Porechop_ABI is not designed to handle barcoded sequences adapters. Demultiplexing should be done using standard Porechop commands or other appropriate tools.` It is...
> I've only worked with FASTQ files that are the result of running guppy so far. I agree with @jfy133 that we should not include demultiplexing in this pipeline. We...
@qbonenfant Thank you for the detailed description 👍