Sofia Stamouli
Sofia Stamouli
Adds module for [Filtlong](https://github.com/rrwick/Filtlong) - [x] This comment contains a description of changes (with reason) - [x] `CHANGELOG.md` has been updated - [x] There is example tool output for tools...
This PR updates recipe for metamaps. ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). ### General instructions * If this PR adds or updates...
This PR updates the `hasta.config` by adding the process `KRAKENUNIQ_PRELOADEDKRAKENUNIQ`
The format of [Glossary section](https://nf-co.re/docs/contributing/training_guide#glossary) can be improved as follows: - **Learning Objective:** A predictive statement describing the specific outcomes that a training session is intended to achieve. - **Key...
Closes #485 ## PR checklist - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should...
### Description of feature https://nf-co.re/taxprofiler/1.1.7/docs/usage#multiple-runs-of-the-same-sample Would be good to add an example of lanes in documentation above.
### Description of the bug The input schema validation should check for uniqueness between `run_accession` and `sample_name`. ### Command used and terminal output _No response_ ### Relevant files _No response_...
### Description of feature MetaMaps is tool specifically developed for the analysis of long-read (PacBio/Oxford Nanopore) metagenomic datasets. It simultaenously carries out read assignment and sample composition estimation.It is faster...
### Description of feature https://www.biorxiv.org/content/10.1101/2022.01.31.478527v1 FYI the preprint that @Midnighter linked used PacBio's snakemake workflow for HiFi/nanopore reads with MEGAN-LR, and describes which executable tools + files are used from...
This PR closes #401 ## PR checklist - [x] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that...