samplot
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ryanlayer
Plot structural variant signals from many BAMs and CRAMs
Hi there, Thanks for developing this, such a great tools! However, for some reason I could not see the blue legend (inversion read) - I can see that in some...
If an image is missing, there is currently just an infinite spinning wheel. This PR adds a helpful popup with info about which file that is missing. Example below
I generated a `vcf` file with `sniffles` (on PacBio HiFi reads aligned to hg38) and I am trying to visualize SVs using `samplot vcf` (`conda` installation). `vcf` file stats: ```...
Hi, Is there a way to just get the affected gene transcript in the annotation, other than all the transcripts? Regards, Prasun
Hi, I found the parameter to change legend font size. I was not able to find any option to change legend lable. Is it possible to change the legend label...
When used with `--zoom` option, samplot's genome coordinates in the x-axis are incorrect. The plot itself appears to be correct and the only problem appears to be with the x-axis...
In the function `get_tabix_iter`, the tabix fetch is done with `start-1000` and `end+1000`. Why do we do this? Is it some sort of padding of the interval based on the...
Would it be possible to create some sort of picture database with label(e.g., SV type, genotype, etc.) so people can just train the model with the samplot output? Maybe a...
The MI field for molecular identifiers for some bam files are the UMI sequence itself (MI:Z:ACGTTCG); but in adding these to linked reads, samplot attempts to cast this field into...
When I install samplot using "conda -c bioconda samplot", it always reports the error: "UnsatisfiableError: The following specifications were found to be incompatible with each other: Output in format: Requested...
