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                                            pintoa1-mskcc

Wrong last stable nucleotide for a deletion in GRCh37 to GRCh38 conversion

I too am having issues where insertions become deletions. It seems when using Crossmap MAF, the tool doesnt actually look at the original reference (-) and just shoves in the...

Wrong last stable nucleotide for a deletion in GRCh37 to GRCh38 conversion

In regard to CROSSMAP MAF and how it handles indels, shouldI open a separate issue?

Fusion Transcript Annotation

Hi again! Thank you for your tool, is there any update on any documentation for the frame assignment?