pintoa1-mskcc

Hi all, My group is developing a pipeline and we frequently encounter standard ribo-depleted RNA sequencing panels, as well as IDT targeted panels. To that end, how does salmon handle...

Hi I have been working with combat-seq for a little while, where I quantify with kallisto, import with tximport, load to deseq2 to get "raw" counts, then run combat-seq on...

[Oncokb CNA annotator can now accept numeric values that match GISTIC](https://docs.cbioportal.org/file-formats/#discrete-copy-number-data) Given that, can we report the numeric values in our final outputs as well? For reference: > For each...

# Add Starseqr Starseqr.py added. Added Starseqr minimally to arguments.json.

Fusion Transcript Annotation

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Hi! Thank you for your tool it is very helpful. Would you be able to provide some documentation on the fusion_transcripts.csv file? Specifically for how exon-exon differs from in-frame.

Links are Broken

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Download links and user manual links are broken