Paul Stapor
Paul Stapor
**Bug description** I get a parameter mapping error for a (fairly large) model, when calling the pyPESTO objective function. The model is imported from PEtab. The main problem: A parameter,...
After a short chat at COMBINE conference, I think it would be very helpful to underline (either in the docs or somewhere else) that pyPESTO doesn't have to use AMICI,...
Profile likelihood results are not necessarily easy to interpret. Yet, having worked with them for a while, one can read a lot out of bad results. It would be really,...
Hi, I just had the idea that one could organize profiling slightly different, by passing the * the `profile_index`, as now, i.e., the parameters to be profiled * the `profile_mode`...
Since we already have the functionality to compute and store many profiles per parameter, we have everything at hand to implement a profile merger.
If I understood correctly, it is an aim for Amici to have plotting routines for the model simulation. The question is, if we want to use those in pyPESTO or...
Currently, exceptions and warnings are not tested in pyPESTO. Not all of them would be important to test, but some things (e.g., exceptions for incorrect settings passed by the user)...
Currently, the profiling routines would crash if whatever uncaught error happens in the optimization routines.That should be changed. Especially a specific handling of non-evaluable starting points for optimization would be...
This one is to replace #1245. However, it seems like in the long time of divergence, there were changes to functions from sbml_import, that may be not captured, as these...