AMICI Python splines

This one is to replace #1245. However, it seems like in the long time of divergence, there were changes to functions from sbml_import, that may be not captured, as these functions have been moved out of sbml_import.py to sbml_utils.py on the python_splines branch... It looks like automatic merge of these files did not do completely the right thing... So, we have to be careful about functions that have been moved to newly created files, it seems...

Jun 17 '21 15:06 paulstapor

ping @lcontento

Nov 05 '21 10:11 dweindl

Codecov Report

Merging #1515 (71735b6) into develop (81d32e7) will increase coverage by 0.50%. The diff coverage is 80.15%.

Additional details and impacted files

@@             Coverage Diff             @@
##           develop    #1515      +/-   ##
===========================================
+ Coverage    75.56%   76.06%   +0.50%     
===========================================
  Files           76       80       +4     
  Lines        13126    14679    +1553     
===========================================
+ Hits          9919    11166    +1247     
- Misses        3207     3513     +306

Flag	Coverage Δ
cpp	`73.47% <79.65%> (+0.49%)`	:arrow_up:
petab	`49.14% <20.69%> (-5.77%)`	:arrow_down:
python	`76.79% <80.49%> (+7.92%)`	:arrow_up:
sbmlsuite	`∅ <ø> (∅)`

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files	Coverage Δ
include/amici/abstract_model.h	`0.00% <ø> (ø)`
include/amici/model.h	`56.00% <ø> (ø)`
include/amici/model_state.h	`100.00% <ø> (ø)`
python/sdist/amici/petab_import.py	`69.41% <ø> (ø)`
python/sdist/amici/pysb_import.py	`91.94% <ø> (ø)`
src/spline.cpp	`65.59% <ø> (ø)`
include/amici/splinefunctions.h	`33.33% <33.33%> (ø)`
src/splinefunctions.cpp	`77.22% <77.22%> (ø)`
python/sdist/amici/sbml_import.py	`75.98% <77.77%> (-0.13%)`	:arrow_down:
python/sdist/amici/splines.py	`78.90% <78.90%> (ø)`
... and 5 more