Bhavya Papudeshi comments

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                                            Bhavya Papudeshi

libjellyfish-2.0.so.2: cannot open shared object file error

Hey I did try installing it again using the commands you have given me. This time i have installed the jellyfish-1.1.11, however the same error seems to occur. Once again...

libjellyfish-2.0.so.2: cannot open shared object file error

Hey thanks got it, used this method to get it working /jellyfish-1.1.11$ ps PID TTY TIME CMD 3463 pts/2 00:00:00 bash 12863 pts/2 00:00:00 ps /jellyfish-1.1.11$ export LD_LIBRARY_PATH="/usr/local/lib" So i...

the python_script folder is not part of the release

Awesome, thank you for the links. Yeah adding them to a new release would be great, Thank you, Bhavya On Fri, Jul 13, 2018 at 8:57 AM Ben Fulton wrote:...

Adding branch length and bootstraps to a consensus tree

Thank you for the reply. I didn't consider using just the support values for the best found ML tree. How do I pick the best ML tree from the bootstrap...

Support for megahit

Can you please add megahit2 to the list of assemblies that graphbin2 could work on. Thank you

Python 3 pachage rpy2 needs to be installed to use the R function.

I am running into the same error, any idea how this can be fixed? ValueError in line 131 of /home/rsiani/PopCOGenT-master/src/flexible_genome_sweeps/Snakefile: Python 3 package rpy2 needs to be installed to use...

Saved models could not be loaded: 'str' object has no attribute 'decode'

Hi, I am running into the same error as well. I downloaded checkm2 v1.0.1 and its databases using conda. But, I am running into an error checkm2 predict --input MAGs/bins...

How to calculate the relative abundance

The code just grabs a specific column from kraken output file. Currently, the code is not written to calculate relative abundance. I will make a note to add this to...

Bioconda recipe for 1.2.4 appears to be broken?

Also running into this error with prinseq++ v1.2.4 from bioconda `prinseq++: symbol lookup error: prinseq++: undefined symbol: _ZN5boost9iostreams4zlib8deflatedE`

UnicodeEncodeError when running testrun and on real data.

I am also running into the same error. I am running checkM2 v1.0.2 ``` [08/15/2024 10:18:11 AM] INFO: Annotating input genomes with DIAMOND using 30 threads Traceback (most recent call...