Support for megahit

[adityabandla]

Are there plans to support megahit assemblies?

[Vini2]

Thanks for the question! We are planning to add support for more assembly tools (including MEGAHIT) in the future. I will keep the issue open until I update the code.

Cheers!

[zoey-rw]

Hi! Just wondering if support for Megahit is still a planned feature (in my case, I've already carried out contig assembly with Megahit and binning with MaxBin2 and would like to use GraphBin2 to improve the resulting bins).

[Vini2]

Hello @zoey-rw,

We are currently working on integrating MEGAHIT support for GraphBin2. The feature will be available soon.

Cheers!

[schorlton]

Hi @Vini2 , thanks for your great work! Wondering if you have any rough code which I could help with to get megahit going? Thanks!

[npbhavya]

Can you please add megahit2 to the list of assemblies that graphbin2 could work on.

Thank you

[LDoni]

follow :)

[fergsc]

Hi, Did megahit ever get integrated into GraphBin2?

Thanks