Bhavya Papudeshi

libjellyfish-2.0.so.2: cannot open shared object file error

5

So i have been trying to use jellyfish to count kmers of size 4, so i have been using the following command jellyfish count -s 400000 -t 32 -C -m...

the python_script folder is not part of the release

6

I am running cafe on my data following the tutorial and noticed that the python_scripts are not part of the release I have installed. I did copy the python scripts...

Adding branch length and bootstraps to a consensus tree

3

I was able to build a 100 trees with branch lengths using tutorial available. But when when I run the command to build a consensus tree to get the bootstrap...

Hi, We are currently running the core_gene_sweep module, and stuck at third step which is running phyml. Do you have any suggestions on how to make this step run quicker,...