Ekaterina Noskova
Ekaterina Noskova
Hi @dmacguigan, I am afraid the only way to get some pictures right away is to run `final_best_logLL_model_moments_code.py` - it will draw plot of the final history using moments. If...
I will check on the error, thank you for the feedback.
GADMA plots demes for models specified by structure only. If I am not mistaken, dadi can generate demes files for its models, but it is not part of GADMA, but...
Dear @dmacguigan, Pictures for moments might be very picky on matplotlib version. I have checked my tests and seems I have the following version requirement: "matplotlib
I am so sorry you have to deal with all these issues! Yes, seems that you need `numpy
Oh, that is totally my fault, but it can be easily fixed. For some reason, [this line](https://github.com/ctlab/GADMA/blob/master/gadma/optimizers/bayesian_optimization.py#L8C3-L8C72) is commented out, but it should not be (or at least not the...
I am so glad to hear that! Fingers crossed.
In the same file `gadma/optimizers/bayesian_optimization.py` you can uncomment class GPyOptBayesianOptimizer (lines 86-311) - then it should be solved. I really appreciate everything you are doing, I recently slightly updated code...
Oh, okay, just leave lines 309-313 still commented.
Hi @dmacguigan, Sorry for slow reply. Regarding the plotting error: unfortunately, moments cannot draw comparison of model and data site frequency spectra for four and five populations. GADMA does not...