Ekaterina Noskova
Ekaterina Noskova
Dear Emma, Wow, thank you for the details! Below, I provide the steps that I used just now to install and run GADMA on my laptop, I hope that will...
Hi @steigeec, I am glad you have successfully overcame installation issue! Please let me know if you have any further questions. Ekaterina
Thank you very much for your feedback! Best regards, Ekaterina
Hello @lmarieslava, Yes, sure! The setting "Relative parameters" is responsible for parameters' units. Usually, GADMA prints output in physical units if mutation rate and sequence length are set. Time is...
Hi @kristinaleilani, That is a very good question. GADMA does not consider history without population split for two populations by default. However, you easily can do it. You have to...
Hi Misha, Nice to hear from you. Hmm, I see, you want to have a zero time of the epoch after split, right? This make sense to me. I think...
Hi @dmacguigan, Unfortunately, it can take a lot of time. The duration depends on your cluster and on the sample size of your data - the bigger SFS is, the...
I would suggest you downproject SFS to 10 per population. You can just specify `Projections: 10,10,10,10,10` in your parameters file. It will still take some time, but will be significantly...
Hi, Have you tried to run it the second time? I think I know why this error occurred, but it might be just a very rare case. Anyway, if easySFS'...
If you update GADMA to the last version, it should print a proper values for Nanc instead of `[WARNING Nanc < 0!]`.