Ekaterina Noskova
Ekaterina Noskova
Hi Audi, I have finished correction of tests and everything is working fine. You can install updated version of GADMA by: `pip install -i https://test.pypi.org/simple/ gadma` Keep me updated about...
As I know it should convert output from ANGSD to SFS for dadi/moments.
Hi @anubhabkhan , Sorry for the late reply. The error occurs during VCF data reading. `Moments` sometimes failed to read files. Let's find out what is the reason and I...
Hi @anubhabkhan, Sorry for slow reply, I have checked VCF file that you have sent and found that in some samples there is haploid information. That is why the error...
Hi Anubhab, Great! I see that file was successfully read. The error is caused because GADMA tries to build model using `moments` engine for more than 5 populations. How many...
You are welcome!
Hi, thank you for using GADMA! Inferencing the demographic history for three populations can be time-consuming. Do you have a total of 192 _diploid_ individuals? If so, then it will...
Hi, I am glad to hear from you. From my experience, it can be difficult to install specific versions of packages using conda - as I remember it force you...
Dear Emma, Thank you for reminding me about your issue, sorry for slow reply. Yes, it is definitely numpy version that causes the error you see. I can recommend to...
Dear Emma, I am sure that together we can solve this problem! Let us check the following things: - GADMA works with smac==0.13.1. The new versions of smac are quite...