ss3-source-code
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The source code for Stock Synthesis (SS3).
SS produces ALK that are a snapshot in time. It uses the mean and sd of length-at-age at a particular time. This is appropriate for surveys that typically are about...
Hi, I'm running an SS3 model and notice that the warning.sso output file says "Number of lamdas !=0.0 and !=1.0: 8". This pull request changes the warning message to say...
### Describe the solution you would like. With time-varying biology, it is ambiguous whether the harvest control rule inflection should be relative to the virgin SSB or the unfished, benchmark...
### Describe the bug These calculations were using biology from the last year of forecast, not the biology associated with Benchmark specifications. This is all being worked on in the...
### Refactor request simple streamlining of the code ### Expected behavior no change
## Concisely describe what has been changed/addressed in the pull request. Replace all the individual join function constants with the constant termed joinsteep and with a value of 50. Values...
### Describe the bug For purposes of testing r4ss functions, I was going to add additional variances of derived quantities to the "simple_small" model included in r4ss: https://github.com/r4ss/r4ss/tree/main/inst/extdata/simple_small. However, I...
continuation of PR #442 after updating from 3.30.23 main on 11/06/2024 This implements SRR function 10 for Bev-Holt with alpha, beta also adds two new controls to give user more...
### Issue description @kellijohnson-NOAA found the following code to solve the problem when you push code up to a branch many times, it fails quickly, and then you push new...
### Describe the solution you would like. A generic approach to implementing effective degrees of freedom has been developed by Monahan, Thorson, Ianelli. See Jan 13, 2025 email. ### Describe...