ss3-source-code
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nmfs-ost
The source code for Stock Synthesis (SS3).
currently, all the regression tests of stock synthesis use MLE, but sometimes stock synthesis models are run using mcmc. Set up a test that runs mcmc and checks outputs. This...
The no est and with est jobs could be combined, with an argument to tell which version to use.
The recent discussion on ASPM leads me to think about the generic category of workflows to run ss3. Some things that fall into this category are: - R program to...
## Concisely (20 words or less) describe the issue create new spawner-recruitment with a,b formulation ## Please Link issue(s) #191 resolves #191 #341 #625 ## What tests have been done?...
create working branch "cleanup_and_document_code_filelist" work on editing and updating SS_filelist.txt I will convert filelist to a markdown file before proceeding much further. This file is a very high level overview,...
### Describe the solution you would like. add new option for M-at-age per the new approach in Multifan-CL paper: https://doi.org/10.1016/j.fishres.2023.106612 ### Describe alternatives you have considered NA ### Statistical validity,...
This line of code seem to limit the Bratio values reported to DERIVED_QUANTITES to start after the first year with catch: https://github.com/nmfs-stock-synthesis/stock-synthesis/blob/main/SS_readdata_330.tpl#L3550-L3551 Thus, in the "Simple" model, where the start...
### Describe the solution you would like. I do not know if anyone is using the output in Growth_Parameters report:45 it is produced by save_gparm and the code to do...
Annual storage of natM was completed with pull request #302 as a first step in transitional SPR. transitional SPR calc needs access to Z_rate, natM, N, fec by t,p,g add...
