ss3-source-code
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nmfs-ost
The source code for Stock Synthesis (SS3).
### Issue description Thanks to @johnoel, ADMB is now available as a Docker image. I think this means we could replace most of this code for installing ADMB https://github.com/nmfs-stock-synthesis/stock-synthesis/blob/main/.github/workflows/build-ss3.yml#L37-L80 with...
### Refactor request This equation is used repeatedly. Useful to turn it into a function. t = styr + (y - styr) * nseas + s - 1; e.g. t...
### Refactor request Max: "I just noted that the newly added feature of having DM parameters separated for retained and discards (which I am using and seems very handy) is...
paper by Miller and Brooks advocates for using the "a", "b" formulation of SRR curves, rather than steepness, when there is time varying biology which affects the spawners per recruit...
Imported from redmine, Issue [#78529](https://vlab.ncep.noaa.gov/redmine/issues/78529) Opened by @RickMethot on 2020-05-12 Status when imported: New A suggestion from Teresa Amar is copied below: I have a question about SS and the...
### Describe the solution you would like. Inadequate trapping of illegal combinations. Need traps and warnings for: float Q cannot be used if error type = -1 (normal error) other...
### Describe the bug @quang-huynh reported an issue with combining SRR option 7 with the setting `do_recdev = 0`, which leads to the following error: ``` Finished calculating benchmarks array...
# Release checklist ## Checklist to get ready for release - [x] SS3 testing and debugging completed (RM and IT) - [x] Check artifact from the `call-build-ss3-warnings` GitHub action for...
### Describe the solution you would like. I suggest that SS3 should modify all objective function components (i.e., data likelihoods, priors, and hierarchical penalties) to use the full log-densities statements....
### Describe the solution you would like. Producing log scale outputs for approaches like MVLN is a feature that some users would find useful. See [APPROXIMATION OF KOBE POSTERIORS FROM...