ss3-source-code
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nmfs-ost
The source code for Stock Synthesis (SS3).
### Describe the solution you would like. Cohort growth deviation multiplier is only applied to von Bert _k_. I was hoping it could be applied to Linf or L2 to...
Imported from redmine, Issue [#68522](https://vlab.ncep.noaa.gov/redmine/issues/68522) Opened by @RickMethot on 2019-09-12 Status when imported: New When there are multiple areas, it is cumbersome to have SS create a main rec dev...
Imported from redmine, Issue [#72712](https://vlab.ncep.noaa.gov/redmine/issues/72712) Opened by @k-doering-NOAA on 2019-12-19 Status when imported: New This is a wishlist item to isolate the growth process so it can completely be bypasses...
### Describe the bug This issue was found in discussion with @rosana-ourens who successfully set up a model with semi-parametric selectivity where there were multiple sigma values to allow more...
For this warning: https://github.com/nmfs-stock-synthesis/stock-synthesis/blob/7c4cbd501ae20cd5dca0fc8c18febd97324fde9f/SS_readdata_330.tpl#L529 I was wondering if a suggestion about what should be done should be added (e.g., add a really small value like 0.001 amount of catch) to...
## Concisely describe what has been changed/addressed in the pull request. revise recruitment distribution output to show males and females. This is helpful for hermaphroditism applications * Resolves issue #611...
### Describe the solution you would like. The Mgmt_Quant report lacks information on recruitment levels. This seems useful to add: #_Mgmt_Quantity SSB_unfished 52620.6 0 Totbio_unfished 131373 0 SmryBio_unfished 130864 0...
The 2nd dimension of the `recr_dist` array has length equal to the product of the number of growth patterns and number of sexes: https://github.com/nmfs-ost/ss3-source-code/blob/69cc71611cf790d520a53f7ee47fe6885fdeb8fe/SS_param.tpl#L157 However the RECRUITMENT_DIST output in Report.sso...
### Describe the solution you would like. Recent messages have suggested additional stock-recruit functions be considered (in addition to the 9 options currently in SS3 listed at https://nmfs-ost.github.io/ss3-doc/SS330_User_Manual_release.html#spawner-recruitment), including -...
### Describe the solution you would like. This paper describes a procedure for one step ahead residuals. It overcomes the shortcomings of Pearson residuals for composition data with multinomial logL...