layerfMRI

icon indicating a website link https://layerfmri.com/

icon company NIMH icon location USA icon location Renzo Huber Lab site: https://cmn.nimh.nih.gov/Renzo

Results 4 issues of layerfMRI

Write LN_DECOPSF

The program `LN_NOISE_KERNEL` estimates the temporal noise coupling of neighbouring voxels in form of a point-spread function (PSF) like noise Kernel. It would be nice to have a LayNii program...

enhancement
new feature

LN_GRADSMOOTH only works for single TR images

In version v1.5 the program LN_GRAD_SMOOTH does only work for single TR images. Example to reproduce this bug is: `LN_GRADSMOOTH -input lo_BOLD_intemp.nii -gradfile lo_gradT1.nii -FWHM 1 -within -selectivity 0.1` On...

bug

Fix LN_COLUMNS for single slice nifti data

For LAYNII versions v1.5.6 and older, the programs LN_3DCOLUMNS and LN_IMAGIRO do not work with single slice data. The current work around is to stack three identical slices on top...

enhancement

Weird layers in LN2_LAYERS when CSF and GM touch

2 comment

This is to keep this documented somewhere: The RIM file that is the input to some of the LayNii programs as consisting of segmentation files consisting of CSF border (value...

wontfix