layerfMRI

There has been a bit of a development about these issues. Specifically with respect to the third point _Currently BIDS raw assumes a single contrast per time series and supports...

Yes that would be nice, handy,and easy to do. I guess the max and min are already in LN_INTPRO. And the mean is in LN_DIRECTIONALSMOOTH (dependent on the selectable smoothing...

there are early cumbersome versions of this. E.g. scripts 4 and 5 from @kenshukoiso do this. [https://github.com/kenshukoiso/Whole_Brain_Project/tree/main/script](https://github.com/kenshukoiso/Whole_Brain_Project/tree/main/script) I think this is inspired from an earlier (outdated) workflow here.[https://layerfmri.com/2017/11/26/creatingRimFrom_freesurfer/]( https://layerfmri.com/2017/11/26/getting-layers-in-epi-space/). The...

I agree, this would be very useful for many people. I think the relabeling of segmentation valued from freesurfer might be relatively straight forward. The harder part might be to...

I just tried if on my mac too. And I can confirm that a RIM file with (unzipped) size of 3.5GB (gzipped 875MB) makes LN2_LAYERS use at least 123GB of...

Wow thats magic. I tested it (without include borders, without equibins, without equivol). And for me the improvement is even higher. for a 0.3mm whole brain MP2RGE scan it is...

Hi Scott, The LN_LAYERS_MOOTH program smoothes signal from voxels that are in the same layer. Whether or not a voxel is within a given layer is a binary criteria. With...

Dear @layerConnectome, Thanks for your question. You are right, `LN2_PROFILE` does not extract the layer profiles of time series. It would be reasonable (and quite easy) to include this feature...

Thanks @ppxdm4, your fix is now included in the `devel` branch. I added another shift of half a layer, to account for the fact that there is no zeroth layer...

Hi @ppxdm4, Yes, I believe that the linear case does not use the column file, if you provide it or not. The linear scaling happens on a voxel by voxel...