guillemsanchezsanchez1996

extract barcodes from single fastq file

2

Hello, I downloaded some sc data from a public repository (generated with Chromium Single-Cell 3′ Gel Bead and Library V2 Kit). The issue here is that the fastq file contains...

Dear Demuxlet team, I am writing to express my gratitude for developing such a cool software tool for single-cell RNA sequencing data analysis. Demuxlet can be really helpful in my...

usage with mixcr files

8

Dear Phil, After reading your paper I would be interested in checking identifying shared motifs in a particular subset of sorted T cells that undergo strong TCR signaling during their...

Hello Phil, I have found in some of my sc 10x vdj data sequences that contain a TRDV1 gene segment combined with TRAJ and TRAC genes (see this recent paper...

Issue with logo plots

1

Hello everybody, First of all thanks a lot Conga team for creating this nice and cool package, and for keeping in mind the gd TCR "aficionados" in your work. I...

issue with metaclustering and airr data

5

Hello Sebastian and co. Thanks a lot for designing this nice package to understand the nature of TCR repertoire and potential expansions. My goal with the current airr data I...

run trust4 with 5' sorted T-cell data

5

Hello, Thanks again for creating this nice package! I want to let you know that It has been instrumental to build up a paper that will be soon published in...