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deal with TRDV1_TRAJ_TRAC sequences

Open guillemsanchezsanchez1996 opened this issue 1 year ago • 0 comments

Hello Phil,

I have found in some of my sc 10x vdj data sequences that contain a TRDV1 gene segment combined with TRAJ and TRAC genes (see this recent paper https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10702483/).

Is there a possibility to include the TRDV1 gene among the TRA reference to not get an error 'bad va gene' when preprocessing the 10x vdj data.

Thanks in advance,

Guillem